Phase 14 - Organized directories.

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# Documentation
- `guides/` contains user guides and practical project workflows.
- `architecture/` describes implemented systems and maintained technical references.
- `specs/` contains feature specifications, including completed phase specs.
- `plans/` is for active and future implementation plans.
- `archive/` preserves older project references and completed plan drafts.
- `known_issues.md` tracks current bugs and deferred fixes.
Keep `README.md` and `AGENTS.md` at the repository root for project onboarding and implementation rules.
## Architecture references
- [Repository organization](architecture/repository_organization.md) documents the feature-based folder layout, legacy content-path mapping, and serialized file-format compatibility contract.